Download output files for plotting

Users can directly run the following codes to download TomoATT output files for plotting


python prepare_files.py             # download the files for plotting
tar -xf files_for_plotting.tar.gz   # extract the files

These files can be generated by setting true for all output options in the YAML file.


############################################
#            output file setting           #
############################################
output_setting:
  output_dir: OUTPUT_FILES/OUTPUT_FILES_inv # path to output director (default is ./OUTPUT_FILES/)
  output_source_field:     true # True: output the traveltime field and adjoint field of all sources at each iteration. Default: false. File: 'out_data_sim_group_X'.
  output_kernel:           true # True: output sensitivity kernel and kernel density. Default: false. File: 'out_data_sim_group_X'.
  output_final_model:      true # True: output merged final model. This file can be used as the input model for TomoATT. Default: true. File: 'model_final.h5'.
  output_middle_model:     true # True: output merged intermediate models during inversion. This file can be used as the input model for TomoATT. Default: false. File: 'middle_model_step_XXXX.h5'
  output_in_process:       true # True: output at each inv iteration, otherwise, only output step 0, Niter-1, Niter. Default: true. File: 'out_data_sim_group_0'.
  output_in_process_data:  true # True: output src_rec_file at each inv iteration, otherwise, only output step 0, Niter-2, Niter-1. Default: true. File: 'src_rec_file_step_XXXX.dat'
  single_precision_output: true # True: output results in single precision. Default: false.   
  verbose_output_level:    0 # output internal parameters, (to do).
  output_file_format: 0 # 0: hdf5, 1: ascii

The following options may cause extensive I/O cost and storage burden, thus, are typically set as false in large-scale inversion tasks:

output_source_field: true will store all traveltime fields (3D array) from all sources
output_in_process: true will output all intermediate models and/or kernels and/or source fields (3D arrays) at each iteration.
output_in_process_data: true will output all intermediate DATA files at each iteration.